Publications communes aux équipes du G-RREMI depuis 2019

2022
Anti-TNF agents restrict adherent-invasive Escherichia coli replication within macrophages through modulation of chitinase 3-like 1 in patients with Crohn’s disease. Douadi C, Vazeille E, Chambon C, Hébraud M, Dodel M, Coban D, Pereira B, Birer A, Sauvanet P, Buisson A, and Barnich N. 2022. J. Crohn’s Colitis, (sous presse).

2021
Exploring the diversity of fungal DyPs in Mangrove soils to produce and characterize novel biocatalysts. Ben Ayed A, Saint-Genis G, Vallon L, Linde D, Turbé-Doan A, Haon M, Daou M, Bertrand E, Faulds CB, Sciara G, Adamo M, Marmeisse R, Comtet-Marre S, Peyret P, Abrouk D, Ruiz-Dueñas FJ, Marchand C, Hugoni M, Luis P, Mechichi T, Record E. 2021. J Fungi (Basel) 7:321. https://doi.org/10.3390/jof7050321

Microorganisms associated with mosquito oviposition sites : Implications for habitat selection and insect life histories. Girard M, Martin E, Vallon L, Raquin V, Bellet C, Rozier Y, Desouhant E, Hay AE, Luis P, Valiente Moro C and Minard G. 2021 Microorganisms, 9(8), 1589 https://doi.org/10.3390/microorganisms9081589

Nanoscale dynamics of peptidoglycan assembly during the cell cycle of Streptococcus pneumoniae. Trouvé J, Zapun A, Arthaud C, Durmort C, Di Guilmi AM, Söderström B, Pelletier A, Grangeasse C, Bourgeois D, Wong YS and Morlot C. 2021. Curr. Biol., 60, 44-50. doi : https://doi.org/10.1016/j.cub.2021.04.041

Cytotype Affects the Capability of the Whitefly Bemisia tabaci MED Species To Feed and Oviposit on an Unfavorable Host Plant. Benhamou S, Rahioui I, Henri H, Charles H, Da Silva P, Heddi A, Vavre F, Desouhant E, Calevro F, Mouton L. mBio. 2021 Nov 16 ;12(6):e0073021. doi : 10.1128/mBio.00730-21 PMID : 34781749

The transposable element-rich genome of the cereal pest Sitophilus oryzae. Parisot N, Vargas-Chávez C, Goubert C, Baa-Puyoulet P, Balmand S, Beranger L, Blanc C, Bonnamour A, Boulesteix M, Burlet N, Calevro F, Callaerts P, Chancy T, Charles H, Colella S, Da Silva Barbosa A, Dell’Aglio E, Di Genova A, Febvay G, Gabaldón T, Galvão Ferrarini M, Gerber A, Gillet B, Hubley R, Hughes S, Jacquin-Joly E, Maire J, Marcet-Houben M, Masson F, Meslin C, Montagné N, Moya A, Ribeiro de Vasconcelos AT, Richard G, Rosen J, Sagot MF, Smit AFA, Storer JM, Vincent-Monegat C, Vallier A, Vigneron A, Zaidman-Rémy A, Zamoum W, Vieira C, Rebollo R, Latorre A, Heddi A. BMC Biol. 2021 Nov 9 ;19(1):241. doi : 10.1186/s12915-021-01158-2. PMID : 34749730

Implications of carbon catabolite repression for plant-microbe interactions. Franzino T, Boubakri H, Cernava T, Abrouk D, Achouak W, Reverchon S, Haichar FeZ. Plant Communications. 2021:100272. https://doi.org/10.1016/j.xplc.2021.100272

Beneficial Effects of High Intensity Interval Training and/or Linseed Oil Supplementation to Limit Obesity-Induced Oxidative Stress in High Fat Diet-Fed Rats.
Groussard C, Plissonneau C, Josset L, Capel F, Mura M, Gouraud E, Mairesse G, Chesneau G, Barnich N, Pialoux V, Boisseau N. Nutrients. 2021 Oct 9 ;13(10):3531. doi : 10.3390/nu13103531. PMID : 34684532

Exploring the Diversity of Fungal DyPs in Mangrove Soils to Produce and Characterize Novel Biocatalysts. Ben Ayed A, Saint-Genis G, Vallon L, Linde D, Turbé-Doan A, Haon M, Daou M, Bertrand E, Faulds CB, Sciara G, Adamo M, Marmeisse R, Comtet-Marre S, Peyret P, Abrouk D, Ruiz-Dueñas FJ, Marchand C, Hugoni M, Luis P, Mechichi T, Record E. J Fungi (Basel). 2021 Apr 21 ;7(5):321. doi : 10.3390/jof7050321. PMID : 33919051

Multi-targeted properties of the probiotic saccharomyces cerevisiae CNCM I-3856 against enterotoxigenic escherichia coli (ETEC) H10407 pathogenesis across human gut models. Roussel C, De Paepe K, Galia W, de Bodt J, Chalancon S, Denis S, Leriche F, Vandekerkove P, Ballet N, Blanquet-Diot S, Van de Wiele T. Gut Microbes. 2021 Jan-Dec ;13(1):1953246. doi : 10.1080/19490976.2021.1953246. PMID : 34432600

Next-Generation Sequencing and MALDI Mass Spectrometry in the Study of Multiresistant Processed Meat Vancomycin-Resistant Enterococci (VRE).
Sabença C, Sousa T, Oliveira S, Viala D, Théron L, Chambon C, Hébraud M, Beyrouthy R, Bonnet R, Caniça M, Poeta P, Igrejas G. Biology (Basel). 2020 Apr 27 ;9(5):89. doi : 10.3390/biology9050089. PMID : 32349310

In Vitro Evaluation of Dietary Fiber Anti-Infectious Properties against Food-Borne Enterotoxigenic Escherichia coli. Sauvaitre T, Durif C, Sivignon A, Chalancon S, Van de Wiele T, Etienne-Mesmin L, Blanquet-Diot S. Nutrients. 2021 Sep 14 ;13(9):3188. doi : 10.3390/nu13093188. PMID : 34579065

Tripartite relationship between gut microbiota, intestinal mucus and dietary fibers : towards preventive strategies against enteric infections. Sauvaitre T, Etienne-Mesmin L, Sivignon A, Mosoni P, Courtin CM, Van de Wiele T, Blanquet-Diot S. FEMS Microbiol Rev. 2021 Mar 16 ;45(2):fuaa052. doi : 10.1093/femsre/fuaa052. PMID : 33026073

Les microbiotes des ruminants : état des lieux de la recherche et impacts des microbiotes sur les performances et la santé des animaux. ZENED, A., FORANO, E., DELBES, C., VERDIER-METZ, I., MORGAVI, D., POPOVA, M., RAMAYO-CALDAS, Y., BERGONIER, D., MEYNADIER, A., & MARIE-ETANCELIN, C. (2021). INRAE Productions Animales, 33(4), 249–260. https://doi.org/10.20870/productions-animales.2020.33.4.4597

Local Adaptation of Legionella pneumophila within a Hospital Hot Water System Increases Tolerance to Copper. Bédard E, Trigui H, Liang J, Doberva M, Paranjape K, Lalancette C, Allegra S, Faucher SP, Prévost M. Appl Environ Microbiol. 2021 Apr 27 ;87(10):e00242-21. doi : 10.1128/AEM.00242-21. Print 2021 Apr 27. PMID : 33674435 Free PMC article.

Agrobacterium fabrum C58 uses nitrate reductase NapA and antisense RNA NorR to denitrify. S, Lecomte, X, Nesme, T, Franzino, C, Villard, M, Pivard, L, Vial, J, Doré, F, Hommais and F.Z, Haichar. (2021). FEMS Microbiol Ecol, fiaa233, https://doi.org/10.1093/femsec/fiaa233.

2020
Who is eating fructose within the Aedes albopictus gut microbiota ? Guégan M, Van Tran V, Martin E, Minard G, Tran FH, Fel B, Hay AE, Simon L, Barakat M, Potier P, Haichar FZ and Valiente Moro C. 2020. Env. Microbiol. 22(4) : 1193-1206. doi : 10.1111/1462-2920.14915

Structural features of the interaction of MapZ with FtsZ and membranes in Streptococcus pneumoniae. Hosek T, Bougault CM, Lavergne JP, Martinez D, Ayala I, Fenel D, Restelli M, Morlot C, Habenstein B, Grangeasse C and Simorre JP. 2020. Sci. Rep. 4051. doi : https://doi.org/10.1038/s41598-020-61036-9

Drosophila-associated bacteria differentially shape the nutritional requirements of their host during juvenile growth. Consuegra J, Grenier T, Baa-Puyoulet P, Rahioui I, Hakerraz H, Gervais H, Da Silva P, Charles H, Calevro F, Leulier F. PLoS Biol. 2020 Mar 20 ;18(3):e3000681. doi : 10.1371/journal.pbio.300068. PMID : 32196485

Metabolic Cooperation among Commensal Bacteria Supports Drosophila Juvenile Growth under Nutritional Stress. Consuegra J, Grenier T, Akherraz H, Rahioui I, Gervais H, da Silva P, Leulier F. iScience. 2020 Jun 26 ;23(6):101232. doi : 10.1016/j.isci.2020.101232. Epub 2020 Jun 4. PMID : 32563155

Pathogenicity Factors of Genomic Islands in Intestinal and Extraintestinal Escherichia coli. Desvaux M, Dalmasso G, Beyrouthy R, Barnich N, Delmas J, Bonnet R. Front Microbiol. 2020 Sep 25 ;11:2065. doi : 10.3389/fmicb.2020.02065. eCollection 2020. PMID : 33101219

DOP49 Quantitative proteomics analysis of macrophages from Crohn’s disease patients and infected with adherent-invasive Escherichia coli. C Douadi, E Vazeille, C Chambon, M Hébraud, M Dodel, B Pereira, D Coban, A Buisson, N Barnich, , Journal of Crohn’s and Colitis, Volume 14, Issue Supplement_1, January 2020, Pages S087–S088, https://doi.org/10.1093/ecco-jcc/jjz203.088

Role of the Nitric Oxide Reductase NorVW in the Survival and Virulence of Enterohaemorrhagic Escherichia coli during Infection. Gardette M, Daniel J, Loukiadis E, Jubelin G. Pathogens. 2020 Aug 21 ;9(9):683. doi : 10.3390/pathogens9090683. PMID : 32825770

Differential miRNA-Gene Expression in M Cells in Response to Crohn’s Disease-Associated AIEC. Larabi A, Salesse L, Cordonnier C, Etienne-Mesmin L, Barnich N, Dalmasso G, Nguyen HTT. Microorganisms. 2020 Aug 7 ;8(8):1205. doi : 10.3390/microorganisms8081205. PMID : 32784656

The Secretome landscape of Escherichia coli O157:H7 : Deciphering the cell-surface, outer membrane vesicle and extracellular subproteomes. Monteiro R, Chafsey I, Ageorges V, Leroy S, Chambon C, Hébraud M, Livrelli V, Pizza M, Pezzicoli A, Desvaux M. J Proteomics. 2021 Feb 10 ;232:104025. doi : 10.1016/j.jprot.2020.104025. Epub 2020 Nov 4. PMID : 33160105

Interplay between enterohaemorrhagic Escherichia coli and nitric oxide during the infectious process. Naïli I, Gardette M, Garrivier A, Daniel J, Desvaux M, Pizza M, Gobert A, Marchal T, Loukiadis E, Jubelin G. Emerg Microbes Infect. 2020 Dec ;9(1):1065-1076. doi : 10.1080/22221751.2020.1768804. PMID : 32459575

A Pediococcus strain to rescue honeybees by decreasing Nosema ceranae- and pesticide-induced adverse effects. Peghaire E, Moné A, Delbac F, Debroas D, Chaucheyras-Durand F, El Alaoui H. Pestic Biochem Physiol. 2020 Feb ;163:138-146. doi : 10.1016/j.pestbp.2019.11.006. Epub 2019 Nov 8. PMID : 31973850

Live Biotherapeutic Products, A Road Map for Safety Assessment. Rouanet A, Bolca S, Bru A, Claes I, Cvejic H, Girgis H, Harper A, Lavergne SN, Mathys S, Pane M, Pot B, Shortt C, Alkema W, Bezulowsky C, Blanquet-Diot S, Chassard C, Claus SP, Hadida B, Hemmingsen C, Jeune C, Lindman B, Midzi G, Mogna L, Movitz C, Nasir N, Oberreither M, Seegers JFML, Sterkman L, Valo A, Vieville F, Cordaillat-Simmons M. Front Med (Lausanne). 2020 Jun 19 ;7:237. doi : 10.3389/fmed.2020.00237. eCollection 2020. PMID : 32637416

Spatial and temporal modulation of enterotoxigenic E. coli H10407 pathogenesis and interplay with microbiota in human gut models.
Roussel C, De Paepe K, Galia W, De Bodt J, Chalancon S, Leriche F, Ballet N, Denis S, Alric M, Van de Wiele T, Blanquet-Diot S. BMC Biol. 2020 Oct 14 ;18(1):141. doi : 10.1186/s12915-020-00860-x. PMID : 33054775

A valuable experimental setup to model exposure to Legionella’s aerosols generated by shower-like systems.
Allegra S, Riffard S, Leclerc L, Girardot F, Stauffert M, Forest V, Pourchez J. Water Res. 2020 Apr 1 ;172:115496. doi : 10.1016/j.watres.2020.115496. Epub 2020 Jan 9. PMID : 31972415. PMID : 32312449

Legionella pneumophila sg1-sensing signal enhancement using a novel electrochemical immunosensor in dynamic detection mode.
Laribi A, Allegra S, Souiri M, Mzoughi R, Othmane A, Girardot F. Talanta. 2020 Aug 1 ;215:120904. doi : 10.1016/j.talanta.2020.120904. Epub 2020 Mar 10. PMID : 32312449. PMID : 32442874

Fungal and bacterial outbreak in the wine vinification area in the Saint-Marcel show cave. Cailhol D, Ciadamidaro L, Dupuy D, Allegra S, Girardot F, Pfendler S. Sci Total Environ. 2020 Sep 1 ;733:138756. doi : 10.1016/j.scitotenv.2020.138756. Epub 2020 May 4. PMID : 32442874. PMID : 32827890

Bacterial diversity on an abandoned, industrial wasteland contaminated by polychlorinated biphenyls, dioxins, furans and trace metals. Girardot F, Allégra S, Pfendler S, Conord C, Rey C, Gillet B, Hughes S, Bouchardon AE, Hua A, Paran F, Bouchardon JL, Faure O. Sci Total Environ. 2020 Dec 15 ;748:141242. doi : 10.1016/j.scitotenv.2020.141242. Epub 2020 Aug 1. PMID : 32827890.PMID : 33674435

Plasmid‐chromosome crosstalks. Ludovic Vial, Florence Hommais. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2020, 22 (2), pp.540-556. ⟨10.1111/1462-2920.14880⟩ DOI : 10.1111/1462-2920.14880

Dickeya poaceiphila sp. nov., a plant-pathogenic bacterium isolated from sugar cane (Saccharum officinarum) Nicole Hugouvieux‐cotte‐pattat, Celine Brochier-Armanet, Jean-Pierre Flandrois, Sylvie Reverchon. International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2020, 70 (8), pp.4508-4514. ⟨10.1099/ijsem.0.004306⟩. DOI : 10.1099/ijsem.0.004306

2019
The tyrosine-autokinase Ubk is required for proper cell growth and cell morphology of Streptococcus pneumoniae. Pelletier A, Freton C, Gallay C, Trouvé J, Franz-Wachtel M, Macek B, Jault JM, Grangeasse C and Guiral S. 2019. Front. Microbiol., 10, 1942. doi : https://doi.org/10.3389/fmicb.2019.01942

Weevil pgrp-lb prevents endosymbiont TCT dissemination and chronic host systemic immune activation. Maire J, Vincent-Monégat C, Balmand S, Vallier A, Hervé M, Masson F, Parisot N, Vigneron A, Anselme C, Perrin J, Orlans J, Rahioui I, Da Silva P, Fauvarque MO, Mengin-Lecreulx D, Zaidman-Rémy A, Heddi A. Proc Natl Acad Sci U S A. 2019 Mar 19 ;116(12):5623-5632. doi : 10.1073/pnas.1821806116. Epub 2019 Feb 28. PMID : 30819893

Comparative genomics and proteogenomics highlight key molecular players involved in Frankia sporulation. Bethencourt L., Boubakri H, Taïbi N, Normand P, Armengaud J, Fournier P, Brochier-Armanet C, Herrera-Belaroussi A. Research in Microbiology. 2019 : 170(4) : 202-213. DOI : 10.1016/j.resmic.2019.04.002

Experimental models to study intestinal microbes-mucus interactions in health and disease. Etienne-Mesmin L, Chassaing B, Desvaux M, De Paepe K, Gresse R, Sauvaitre T, Forano E, de Wiele TV, Schüller S, Juge N, Blanquet-Diot S. FEMS Microbiol Rev. 2019 Sep 1 ;43(5):457-489. doi : 10.1093/femsre/fuz013. PMID : 31162610

Identification and prevalence of in vivo-induced genes in enterohaemorrhagic Escherichia coli. Gardette M, Le Hello S, Mariani-Kurkdjian P, Fabre L, Gravey F, Garrivier A, Loukiadis E, Jubelin G. Virulence. 2019 Dec ;10(1):180-193. doi : 10.1080/21505594.2019.1582976. PMID : 30806162

A novel plasmid-transcribed regulatory sRNA, QfsR, controls chromosomal polycistronic gene expression in Agrobacterium tumefaciens. Diel B, Dequivre M, Wisniewski-Dyé F, Vial L, Hommais F. Environmental microbiology 2019 Aug ;21(8):3063-3075. doi : 10.1111/1462-2920.14704. Epub 2019 Jun 21.